oh yeah, like the one with john tesh where the voyager space probe returns commanding a gigantic unmanned alien to ask for new orders.
or the one where an unknown civilization threatens to blow up the earth because it can't hear whales anymore. Through space.
Or the one where Kirk, Spock, and McCoy find God, and blow him up.
Perhaps some later movies are up to par. Like the one where Picard finds a planet where people live forever, but the federation wants to let some aliens destroy it in return for some technical advice.
or the space ribbon that is like heaven, and some guy wants to blow up a planet to divert its course and get inside, instead of just flying a space craft into it.